Lifestyle, gene gain and loss, and transcriptional remodeling cause divergence in the transcriptomes of Phytophthora infestans and Pythium ultimum during potato tuber colonization.
Identifieur interne : 000974 ( Main/Exploration ); précédent : 000973; suivant : 000975Lifestyle, gene gain and loss, and transcriptional remodeling cause divergence in the transcriptomes of Phytophthora infestans and Pythium ultimum during potato tuber colonization.
Auteurs : Audrey M V. Ah-Fong [États-Unis] ; Jolly Shrivastava [États-Unis] ; Howard S. Judelson [États-Unis]Source :
- BMC genomics [ 1471-2164 ] ; 2017.
Descripteurs français
- KwdFr :
- Analyse de profil d'expression de gènes (MeSH), Gene Ontology (MeSH), Interactions hôte-parasite (génétique), Mode de vie (MeSH), Phytophthora infestans (génétique), Phytophthora infestans (physiologie), Pythium (génétique), Pythium (physiologie), Solanum tuberosum (parasitologie), Spécificité d'hôte (MeSH), Séquence conservée (MeSH), Transcription génétique (MeSH), Tubercules (parasitologie).
- MESH :
- génétique : Interactions hôte-parasite, Phytophthora infestans, Pythium.
- parasitologie : Solanum tuberosum, Tubercules.
- physiologie : Phytophthora infestans, Pythium.
- Analyse de profil d'expression de gènes, Gene Ontology, Mode de vie, Spécificité d'hôte, Séquence conservée, Transcription génétique.
English descriptors
- KwdEn :
- Conserved Sequence (MeSH), Gene Expression Profiling (MeSH), Gene Ontology (MeSH), Host Specificity (MeSH), Host-Parasite Interactions (genetics), Life Style (MeSH), Phytophthora infestans (genetics), Phytophthora infestans (physiology), Plant Tubers (parasitology), Pythium (genetics), Pythium (physiology), Solanum tuberosum (parasitology), Transcription, Genetic (MeSH).
- MESH :
- genetics : Host-Parasite Interactions, Phytophthora infestans, Pythium.
- parasitology : Plant Tubers, Solanum tuberosum.
- physiology : Phytophthora infestans, Pythium.
- Conserved Sequence, Gene Expression Profiling, Gene Ontology, Host Specificity, Life Style, Transcription, Genetic.
Abstract
BACKGROUND
How pathogen genomes evolve to support distinct lifestyles is not well-understood. The oomycete Phytophthora infestans, the potato blight agent, is a largely biotrophic pathogen that feeds from living host cells, which become necrotic only late in infection. The related oomycete Pythium ultimum grows saprophytically in soil and as a necrotroph in plants, causing massive tissue destruction. To learn what distinguishes their lifestyles, we compared their gene contents and expression patterns in media and a shared host, potato tuber.
RESULTS
Genes related to pathogenesis varied in temporal expression pattern, mRNA level, and family size between the species. A family's aggregate expression during infection was not proportional to size due to transcriptional remodeling and pseudogenization. Ph. infestans had more stage-specific genes, while Py. ultimum tended towards more constitutive expression. Ph. infestans expressed more genes encoding secreted cell wall-degrading enzymes, but other categories such as secreted proteases and ABC transporters had higher transcript levels in Py. ultimum. Species-specific genes were identified including new Pythium genes, perforins, which may disrupt plant membranes. Genome-wide ortholog analyses identified substantial diversified expression, which correlated with sequence divergence. Pseudogenization was associated with gene family expansion, especially in gene clusters.
CONCLUSION
This first large-scale analysis of transcriptional divergence within oomycetes revealed major shifts in genome composition and expression, including subfunctionalization within gene families. Biotrophy and necrotrophy seem determined by species-specific genes and the varied expression of shared pathogenicity factors, which may be useful targets for crop protection.
DOI: 10.1186/s12864-017-4151-2
PubMed: 29017458
PubMed Central: PMC5635513
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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<front><div type="abstract" xml:lang="en"><p><b>BACKGROUND</b>
</p>
<p>How pathogen genomes evolve to support distinct lifestyles is not well-understood. The oomycete Phytophthora infestans, the potato blight agent, is a largely biotrophic pathogen that feeds from living host cells, which become necrotic only late in infection. The related oomycete Pythium ultimum grows saprophytically in soil and as a necrotroph in plants, causing massive tissue destruction. To learn what distinguishes their lifestyles, we compared their gene contents and expression patterns in media and a shared host, potato tuber.</p>
</div>
<div type="abstract" xml:lang="en"><p><b>RESULTS</b>
</p>
<p>Genes related to pathogenesis varied in temporal expression pattern, mRNA level, and family size between the species. A family's aggregate expression during infection was not proportional to size due to transcriptional remodeling and pseudogenization. Ph. infestans had more stage-specific genes, while Py. ultimum tended towards more constitutive expression. Ph. infestans expressed more genes encoding secreted cell wall-degrading enzymes, but other categories such as secreted proteases and ABC transporters had higher transcript levels in Py. ultimum. Species-specific genes were identified including new Pythium genes, perforins, which may disrupt plant membranes. Genome-wide ortholog analyses identified substantial diversified expression, which correlated with sequence divergence. Pseudogenization was associated with gene family expansion, especially in gene clusters.</p>
</div>
<div type="abstract" xml:lang="en"><p><b>CONCLUSION</b>
</p>
<p>This first large-scale analysis of transcriptional divergence within oomycetes revealed major shifts in genome composition and expression, including subfunctionalization within gene families. Biotrophy and necrotrophy seem determined by species-specific genes and the varied expression of shared pathogenicity factors, which may be useful targets for crop protection.</p>
</div>
</front>
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<Abstract><AbstractText Label="BACKGROUND" NlmCategory="BACKGROUND">How pathogen genomes evolve to support distinct lifestyles is not well-understood. The oomycete Phytophthora infestans, the potato blight agent, is a largely biotrophic pathogen that feeds from living host cells, which become necrotic only late in infection. The related oomycete Pythium ultimum grows saprophytically in soil and as a necrotroph in plants, causing massive tissue destruction. To learn what distinguishes their lifestyles, we compared their gene contents and expression patterns in media and a shared host, potato tuber.</AbstractText>
<AbstractText Label="RESULTS" NlmCategory="RESULTS">Genes related to pathogenesis varied in temporal expression pattern, mRNA level, and family size between the species. A family's aggregate expression during infection was not proportional to size due to transcriptional remodeling and pseudogenization. Ph. infestans had more stage-specific genes, while Py. ultimum tended towards more constitutive expression. Ph. infestans expressed more genes encoding secreted cell wall-degrading enzymes, but other categories such as secreted proteases and ABC transporters had higher transcript levels in Py. ultimum. Species-specific genes were identified including new Pythium genes, perforins, which may disrupt plant membranes. Genome-wide ortholog analyses identified substantial diversified expression, which correlated with sequence divergence. Pseudogenization was associated with gene family expansion, especially in gene clusters.</AbstractText>
<AbstractText Label="CONCLUSION" NlmCategory="CONCLUSIONS">This first large-scale analysis of transcriptional divergence within oomycetes revealed major shifts in genome composition and expression, including subfunctionalization within gene families. Biotrophy and necrotrophy seem determined by species-specific genes and the varied expression of shared pathogenicity factors, which may be useful targets for crop protection.</AbstractText>
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<AffiliationInfo><Affiliation>Department of Plant Pathology and Microbiology, University of California, Riverside, CA, 92521, USA.</Affiliation>
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